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Informed by an abstraction of Kohn–Sham (KS) computation called a KS machine, a functional analytic perspective is developed on mathematical aspects of density functional theory. A natural semantics for the machine is bivariate, consisting of a sequence of potentials paired with a ground density. Although the question of when the KS machine can converge to a solution (where the potential component matches a designated target) is not resolved here, a number of related ones are. For instance: can the machine progress toward a solution? Barring presumably exceptional circumstances, yes in an energetic sense, but using a potential-mixing scheme rather than the usual density-mixing variety. Are energetic and function space distance notions of proximity-to-solution commensurate? Yes, to a significant degree. If the potential components of a sequence of ground pairs converges to a target density, do the density components cluster on ground densities thereof? Yes, barring particle number drifting to infinity.

 

Habitat‐forming organisms provide three‐dimensional structure that supports abundant and diverse communities. Variation in the morphological traits of habitat formers will therefore likely influence how they facilitate associated communities, either via food and habitat provisioning, or by altering predator–prey interactions. These mechanisms, however, are typically studied in isolation, and thus, we know little of how they interact to affect associated communities. In response to this, we used naturally occurring morphological variability in the algaSargassum vestitumto create habitat units of distinct morphotypes to test whether variation in the morphological traits (frond size and thallus size) ofS. vestitumor the interaction between these traits affects their value as habitat for associated communities in the presence and absence of predation. We found morphological traits did not interact, instead having independent effects on epifauna that were negligible in the absence of predation. However, when predators were present, habitat units with large fronds were found to host significantly lower epifaunal abundances than other morphotypes, suggesting that large frond alga provided low‐value refuge from predators. The presence of predators also influenced the size structure of epifaunal communities from habitat units of differing frond size, suggesting that the refuge value ofS. vestitumwas also related to epifauna body size. This suggests that habitat formers may chiefly structure associated communities by mediating size‐selective predation, and not through habitat provisioning. Furthermore, these results also highlight that habitat traits cannot be considered in isolation, for their interaction with biotic processes can have significant implications for associated communities.

 

Abstract Background The tobacco thrips ( Frankliniella fusca Hinds; family Thripidae; order Thysanoptera) is an important pest that can transmit viruses such as the tomato spotted wilt orthotospovirus to numerous economically important agricultural row crops and vegetables. The structural and functional genomics within the order Thysanoptera has only begun to be explored. Within the > 7000 known thysanopteran species, the melon thrips ( Thrips palmi Karny) and the western flower thrips ( Frankliniella occidentalis Pergrande) are the only two thysanopteran species with assembled genomes. Results A genome of F. fusca was assembled by long-read sequencing of DNA from an inbred line. The final assembly size was 370 Mb with a single copy ortholog completeness of ~ 99% with respect to Insecta. The annotated genome of F. fusca was compared with the genome of its congener, F. occidentalis . Results revealed many instances of lineage-specific differences in gene content. Analyses of sequence divergence between the two Frankliniella species’ genomes revealed substitution patterns consistent with positive selection in ~ 5% of the protein-coding genes with 1:1 orthologs. Further, gene content related to its pest status, such as xenobiotic detoxification and response to an ambisense-tripartite RNA virus (orthotospovirus) infection was compared with F. occidentalis . Several F. fusca genes related to virus infection possessed signatures of positive selection. Estimation of CpG depletion, a mutational consequence of DNA methylation, revealed that F. fusca genes that were downregulated and alternatively spliced in response to virus infection were preferentially targeted by DNA methylation. As in many other insects, DNA methylation was enriched in exons in Frankliniella , but gene copies with homology to DNA methyltransferase 3 were numerous and fragmented. This phenomenon seems to be relatively unique to thrips among other insect groups. Conclusions The F. fusca genome assembly provides an important resource for comparative genomic analyses of thysanopterans. This genomic foundation allows for insights into molecular evolution, gene regulation, and loci important to agricultural pest status. 

Transiting Exoplanet Survey Satellite (TESS) photometry of the polars AM Herculis (AM Her) and AR Ursae Majoris (AR UMa) is presented, along with high-speed photometry. AM Her shows a variety of high states with frequent transitions between them. TESS photometry of AR UMa in the low state reveals no evidence of accretion, while the McDonald 2.1 m telescope caught AR UMa in its high accretion state. Roche-lobe overflow is shut off during low states of AR UMa, while accretion often still takes place during low states of AM Her. We derive inclinations of 50° and 70° for AM Her and AR UMa respectively. To model the high-state light curves of AM Her, we employ a self-organized map light-curve classification scheme to establish common accretion configurations. The cyclotron radiation properties then allow the production of emission region maps on the surface of the white dwarf. The accretion geometry of AM Her is most consistent with a multipolar field structure. The high-state photometry of AR UMa has stochastic accretion flaring, which we attribute to magnetically buffeted mass transfer through the inner Lagrangian point L1. To consider this possibility, we examine the magnetism of both stars and argue that the local magnetic field near L1 can initiate short-lived accretion events and affect transitions between high and low accretion states in both AM Her and AR UMa. In particular, AR UMa has the low state as its default, while AM Her and most other active polars are in the high state by default.

 

The Indian Ocean is a frequent site for the initiation of the Madden–Julian oscillation (MJO). The evolution of convection during MJO initiation is intimately linked to the subcloud atmospheric mixed layer (ML). Much of the air entering developing cumulus clouds passes through the cloud base; hence, the properties of the ML are critical in determining the nature of cloud development. The properties and depth of the ML are influenced by horizontal advection, precipitation-driven cold pools, and vertical motion. To address ML behavior during the initiation of the MJO, data from the 2011/12 Dynamics of the MJO Experiment (DYNAMO) are utilized. Observations from the research vesselRevelleare used to document the ML and its modification during the time leading up to the onset phase of the October MJO. The mixed layer depth increased from ∼500 to ∼700 m during the 1–12 October suppressed period, allowing a greater proportion of boundary layer thermals to reach the lifting condensation level and hence promote cloud growth. The ML heat budget defines an equilibrium mixed layer depth that accurately diagnoses the mixed layer depth over the DYNAMO convectively suppressed period, provided that horizontal advection is included. The advection at theRevelleis significantly influenced by low-level convective outflows from the southern ITCZ. The findings also demonstrate a connection between cirrus clouds and their remote impact on ML depth and convective development through a reduction in the ML radiative cooling rate. The emergent behavior of the equilibrium mixed layer has implications for simulating the MJO with models with parameterized cloud and turbulent-scale motions.

 

We describe three new genera and four new species of small, litter-dwelling millipedes from the states of Oregon and Washington, USA: Miniaria ramifera, n. gen., n. sp., Miniaria richarti, n. gen., n. sp., Tigraria oregonensis, n. gen., n. sp., and Kingaria prattensis, n. gen., n. sp. Some of the unusual characters of these species are discussed, including a new type of sensory array on the third tarsus of males and a newly observed mandibular gland. 

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